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1.
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules.
PLoS Comput Biol
; 20(1): e1011795, 2024 Jan.
Article
in English
| MEDLINE | ID: mdl-38271457
2.
SARS-CoV-2 Omicron BA.5 Infections in Vaccinated Persons, Rural Uganda.
Emerg Infect Dis
; 29(1): 224-226, 2023 01.
Article
in English
| MEDLINE | ID: mdl-36529453
3.
Virus genomes reveal factors that spread and sustained the Ebola epidemic.
Nature
; 544(7650): 309-315, 2017 04 20.
Article
in English
| MEDLINE | ID: mdl-28405027
4.
Automated download and clean-up of family-specific databases for kmer-based virus identification.
Bioinformatics
; 37(5): 705-710, 2021 05 05.
Article
in English
| MEDLINE | ID: mdl-33031509
5.
SARS-CoV-2 Variants, South Sudan, January-March 2021.
Emerg Infect Dis
; 27(12): 3133-3136, 2021 12.
Article
in English
| MEDLINE | ID: mdl-34708685
6.
Correction to: Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.
BMC Genomics
; 21(1): 83, 2020 01 28.
Article
in English
| MEDLINE | ID: mdl-31992192
7.
Whole genome sequencing and phylogenetic analysis of human metapneumovirus strains from Kenya and Zambia.
BMC Genomics
; 21(1): 5, 2020 Jan 02.
Article
in English
| MEDLINE | ID: mdl-31898474
8.
Main Routes of Entry and Genomic Diversity of SARS-CoV-2, Uganda.
Emerg Infect Dis
; 26(10): 2411-2415, 2020 10.
Article
in English
| MEDLINE | ID: mdl-32614767
9.
Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes.
Genome Res
; 27(2): 300-309, 2017 02.
Article
in English
| MEDLINE | ID: mdl-27986821
10.
Virus discovery reveals frequent infection by diverse novel members of the Flaviviridae in wild lemurs.
Arch Virol
; 164(2): 509-522, 2019 Feb.
Article
in English
| MEDLINE | ID: mdl-30460488
11.
Genomic sequence of yellow fever virus from a Dutch traveller returning from the Gambia-Senegal region, the Netherlands, November 2018.
Euro Surveill
; 24(4)2019 Jan.
Article
in English
| MEDLINE | ID: mdl-30696531
12.
Human Coronavirus NL63 Molecular Epidemiology and Evolutionary Patterns in Rural Coastal Kenya.
J Infect Dis
; 217(11): 1728-1739, 2018 05 05.
Article
in English
| MEDLINE | ID: mdl-29741740
13.
Travel measures in the SARS-CoV-2 variant era need clear objectives.
Lancet
; 399(10333): 1367-1369, 2022 04 09.
Article
in English
| MEDLINE | ID: mdl-35247312
14.
Whole-Genome Next-Generation Sequencing to Study Within-Host Evolution of Norovirus (NoV) Among Immunocompromised Patients With Chronic NoV Infection.
J Infect Dis
; 216(12): 1513-1524, 2017 12 19.
Article
in English
| MEDLINE | ID: mdl-29029115
15.
Resurgence of Ebola Virus Disease in Guinea Linked to a Survivor With Virus Persistence in Seminal Fluid for More Than 500 Days.
Clin Infect Dis
; 63(10): 1353-1356, 2016 Nov 15.
Article
in English
| MEDLINE | ID: mdl-27585800
16.
Hospital outbreak of Middle East respiratory syndrome coronavirus.
N Engl J Med
; 369(5): 407-16, 2013 Aug 01.
Article
in English
| MEDLINE | ID: mdl-23782161
17.
The presence of prolines in the flanking region of an immunodominant HIV-2 gag epitope influences the quality and quantity of the epitope generated.
Eur J Immunol
; 45(8): 2232-42, 2015 Aug.
Article
in English
| MEDLINE | ID: mdl-26018465
18.
Infectious diseases epidemic threats and mass gatherings: refocusing global attention on the continuing spread of the Middle East Respiratory syndrome coronavirus (MERS-CoV).
BMC Med
; 14(1): 132, 2016 09 07.
Article
in English
| MEDLINE | ID: mdl-27604081
19.
Local evolutionary patterns of human respiratory syncytial virus derived from whole-genome sequencing.
J Virol
; 89(7): 3444-54, 2015 Apr.
Article
in English
| MEDLINE | ID: mdl-25609811
20.
Genome diversity of Epstein-Barr virus from multiple tumor types and normal infection.
J Virol
; 89(10): 5222-37, 2015 May.
Article
in English
| MEDLINE | ID: mdl-25787276